{ "_id": "6a1f12bab401979e7341de15", "Package": "neutralitytestr", "Title": "Test for a Neutral Evolutionary Model in Cancer Sequencing Data", "Version": "0.0.3", "Authors@R": "person(\"Marc\", \"Williams\", email = \"marcjwilliams1@gmail.com\", role = c(\"aut\", \"cre\"))", "Description": "Package takes frequencies of mutations as reported by high\nthroughput sequencing data from cancer and fits a theoretical\nneutral model of tumour evolution. Package outputs summary\nstatistics and contains code for plotting the data and model\nfits. See Williams et al 2016 and\nWilliams et al 2017 for further details of\nthe method.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "VignetteBuilder": "knitr", "URL": "https://github.com/marcjwilliams1/neutralitytestr", "BugReports": "https://github.com/marcjwilliams1/neutralitytestr/issues", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://marcjwilliams1.r-universe.dev", "Date/Publication": "2021-02-16 17:30:41 UTC", "RemoteUrl": "https://github.com/marcjwilliams1/neutralitytestr", "RemoteRef": "HEAD", "RemoteSha": "86911335a5b22c161adcd6184665faaf0386a95d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-17 07:35:11 UTC", "User": "root" }, "Author": "Marc Williams [aut, cre]", "Maintainer": "Marc Williams ", "MD5sum": "2eae652fc58a03e7c2a2b6a56f45abab", "_user": "marcjwilliams1", "_type": "src", "_file": "neutralitytestr_0.0.3.tar.gz", "_fileid": "5182e0f1238c91dbacaa9c569fc24ec745553ba1468d41d0cd2b55217ed79510", 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distribution 'lsq_plot' Plots the cumulative distribution of the data as well as the best fit linear model line.", "topics": [ "lsq_plot" ] }, { "page": "neutralitytest", "title": "Testing for neutrality on cancer sequencing data", "topics": [ "neutralitytest" ] }, { "page": "neutralitytestr", "title": "'neutralitytestr' package", "topics": [ "neutralitytestr" ] }, { "page": "normalized_plot", "title": "Plot normalized cumulative distribution 'normalized_plot' Plots the (normalized) cumulative distribution of the data as well as the theoretical expectation from a neutral evolutionary model.", "topics": [ "normalized_plot" ] }, { "page": "plot_all", "title": "Plot all plots in the package and make composite figure. 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